J3_5V7Q_012
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAUC*GUUG*CAUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- 5V7Q|1|A|A|2756
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5V7Q_012 not in the Motif Atlas
- Geometric match to J3_4V9F_009
- Geometric discrepancy: 0.1952
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68010.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5V7Q|1|A|C|2755
5V7Q|1|A|A|2756
5V7Q|1|A|U|2757
5V7Q|1|A|C|2758
*
5V7Q|1|A|G|2783
5V7Q|1|A|U|2784
5V7Q|1|A|U|2785
5V7Q|1|A|G|2786
*
5V7Q|1|A|C|2798
5V7Q|1|A|A|2799
5V7Q|1|A|U|2800
5V7Q|1|A|U|2801
5V7Q|1|A|A|2802
5V7Q|1|A|A|2803
5V7Q|1|A|A|2804
5V7Q|1|A|G|2805
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain K
- 50S ribosomal protein L14
Coloring options: