J3_5WYK_004

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WYK_004 not in the Motif Atlas

Homologous match to J3_8C3A_039

Geometric discrepancy: 0.2683

The information below is about J3_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.3

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5WYK|1|SA|U|1168
5WYK|1|SA|G|1169
5WYK|1|SA|G|1170
5WYK|1|SA|A|1171
*
5WYK|1|SA|U|1468
5WYK|1|SA|A|1469
5WYK|1|SA|C|1470
*
5WYK|1|SA|G|1574
5WYK|1|SA|G|1575
5WYK|1|SA|A|1576
5WYK|1|SA|A|1577

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain E2

Ribosomal RNA small subunit methyltransferase NEP1

Chain MB

U3 small nucleolar ribonucleoprotein protein IMP4