J3_5Z3G_004

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AC*GAUACGU*AAUCU

Length

14 nucleotides

Bulged bases

5Z3G|1|B|A|59, 5Z3G|1|B|C|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5Z3G_004 not in the Motif Atlas

Homologous match to J3_8P4V_024

Geometric discrepancy: 0.1641

The information below is about J3_8P4V_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38265.2

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

8

Unit IDs

5Z3G|1|B|A|44
5Z3G|1|B|C|45
*
5Z3G|1|B|G|58
5Z3G|1|B|A|59
5Z3G|1|B|U|60
5Z3G|1|B|A|61
5Z3G|1|B|C|62
5Z3G|1|B|G|63
5Z3G|1|B|U|64
*
5Z3G|1|B|A|96
5Z3G|1|B|A|97
5Z3G|1|B|U|98
5Z3G|1|B|C|99
5Z3G|1|B|U|100

Current chains

Chain B

5.8S rRNA

Nearby chains

Chain l

60S ribosomal protein L35-A

Chain n

60S ribosomal protein L37-A