J3_5ZLU_011
3D structure
- PDB id
- 5ZLU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosome Structure bound to ABC-F protein.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 5ZLU|1|G|U|1240, 5ZLU|1|G|C|1298, 5ZLU|1|G|U|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ZLU_011 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.359
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5ZLU|1|G|C|1237
5ZLU|1|G|A|1238
5ZLU|1|G|A|1239
5ZLU|1|G|U|1240
5ZLU|1|G|G|1241
*
5ZLU|1|G|C|1296
5ZLU|1|G|C|1297
5ZLU|1|G|C|1298
5ZLU|1|G|A|1299
5ZLU|1|G|G|1300
5ZLU|1|G|U|1301
5ZLU|1|G|U|1302
5ZLU|1|G|C|1303
*
5ZLU|1|G|G|1334
5ZLU|1|G|C|1335
5ZLU|1|G|C|1336
5ZLU|1|G|G|1337
Current chains
- Chain G
- 16S ribosomal RNA
Nearby chains
- Chain EE
- Macrolide efflux protein
- Chain F
- 30S ribosomal protein Thx
- Chain M
- 30S ribosomal protein S7
- Chain R
- 30S ribosomal protein S13
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