J3_5ZLU_024

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5ZLU|1|G|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZLU_024 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1608

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5ZLU|1|G|C|826
5ZLU|1|G|U|827
5ZLU|1|G|A|828
5ZLU|1|G|G|829
*
5ZLU|1|G|C|857
5ZLU|1|G|G|858
5ZLU|1|G|A|859
5ZLU|1|G|A|860
5ZLU|1|G|G|861
*
5ZLU|1|G|C|868
5ZLU|1|G|G|869
5ZLU|1|G|U|870
5ZLU|1|G|U|871
5ZLU|1|G|A|872
5ZLU|1|G|A|873
5ZLU|1|G|G|874

Current chains

Chain G

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S2

Chain N

30S ribosomal protein S8