J3_6AWC_005

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6AWC|1|A|U|871

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6AWC_005 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.2775

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6AWC|1|A|C|826
6AWC|1|A|U|827
6AWC|1|A|U|828
6AWC|1|A|G|829
*
6AWC|1|A|C|857
6AWC|1|A|G|858
6AWC|1|A|G|859
6AWC|1|A|A|860
6AWC|1|A|G|861
*
6AWC|1|A|C|868
6AWC|1|A|G|869
6AWC|1|A|U|870
6AWC|1|A|U|871
6AWC|1|A|A|872
6AWC|1|A|A|873
6AWC|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S2

Chain K

30S ribosomal protein S8

Chain X

30S ribosomal protein S21