J3_6AWC_010

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6AWC|1|A|U|1212, 6AWC|1|A|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6AWC_010 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.267

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6AWC|1|A|C|990
6AWC|1|A|U|991
6AWC|1|A|U|992
6AWC|1|A|G|993
6AWC|1|A|A|994
6AWC|1|A|C|995
6AWC|1|A|A|996
6AWC|1|A|U|997
*
6AWC|1|A|A|1044
6AWC|1|A|C|1045
6AWC|1|A|A|1046
6AWC|1|A|G|1047
*
6AWC|1|A|C|1210
6AWC|1|A|U|1211
6AWC|1|A|U|1212
6AWC|1|A|A|1213
6AWC|1|A|C|1214
6AWC|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S14