J3_6AWC_015

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6AWC|1|A|U|1240, 6AWC|1|A|C|1302, 6AWC|1|A|C|1336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6AWC_015 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.3441

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6AWC|1|A|C|1237
6AWC|1|A|A|1238
6AWC|1|A|A|1239
6AWC|1|A|U|1240
6AWC|1|A|G|1241
*
6AWC|1|A|C|1296
6AWC|1|A|G|1297
6AWC|1|A|U|1298
6AWC|1|A|A|1299
6AWC|1|A|G|1300
6AWC|1|A|U|1301
6AWC|1|A|C|1302
6AWC|1|A|C|1303
*
6AWC|1|A|G|1334
6AWC|1|A|U|1335
6AWC|1|A|C|1336
6AWC|1|A|G|1337

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S7

Chain P

30S ribosomal protein S13