J3_6AWD_003

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6AWD|1|A|U|871

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6AWD_003 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.2592

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6AWD|1|A|C|826
6AWD|1|A|U|827
6AWD|1|A|U|828
6AWD|1|A|G|829
*
6AWD|1|A|C|857
6AWD|1|A|G|858
6AWD|1|A|G|859
6AWD|1|A|A|860
6AWD|1|A|G|861
*
6AWD|1|A|C|868
6AWD|1|A|G|869
6AWD|1|A|U|870
6AWD|1|A|U|871
6AWD|1|A|A|872
6AWD|1|A|A|873
6AWD|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S2

Chain H

30S ribosomal protein S5

Chain K

30S ribosomal protein S8