J3_6AZ1_003
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGCG*CAG*CUGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6AZ1_003 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.4136
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6AZ1|1|1|A|861
6AZ1|1|1|G|862
6AZ1|1|1|C|863
6AZ1|1|1|G|864
*
6AZ1|1|1|C|874
6AZ1|1|1|A|875
6AZ1|1|1|G|876
*
6AZ1|1|1|C|885
6AZ1|1|1|U|887
6AZ1|1|1|G|888
6AZ1|1|1|A|889
6AZ1|1|1|A|890
6AZ1|1|1|U|891
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain D
- ribosomal protein S4
- Chain E
- ribosomal protein S4e
- Chain Z
- ribosomal protein S24e
Coloring options: