J3_6AZ1_007
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGGA*UAC*G(7MG)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6AZ1_007 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.0899
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6AZ1|1|1|U|1520
6AZ1|1|1|G|1521
6AZ1|1|1|G|1522
6AZ1|1|1|A|1523
*
6AZ1|1|1|U|1869
6AZ1|1|1|A|1870
6AZ1|1|1|C|1871
*
6AZ1|1|1|G|1994
6AZ1|1|1|7MG|1995
6AZ1|1|1|A|1996
6AZ1|1|1|A|1997
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain 4
- Transfer RNA; tRNA
- Chain H
- ribosomal protein S7
- Chain L
- ribosomal protein S9
- Chain R
- ribosomal protein S13
- Chain X
- ribosomal protein S19e
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