J3_6AZ1_013
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAUG*CUCACUUG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 6AZ1|1|1|U|1874
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6AZ1_013 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.285
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6AZ1|1|1|C|1871
6AZ1|1|1|A|1872
6AZ1|1|1|A|1873
6AZ1|1|1|U|1874
6AZ1|1|1|G|1875
*
6AZ1|1|1|C|1952
6AZ1|1|1|U|1953
6AZ1|1|1|C|1954
6AZ1|1|1|A|1955
6AZ1|1|1|C|1956
6AZ1|1|1|U|1957
6AZ1|1|1|U|1958
6AZ1|1|1|G|1959
*
6AZ1|1|1|C|1991
6AZ1|1|1|G|1992
6AZ1|1|1|A|1993
6AZ1|1|1|G|1994
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain H
- ribosomal protein S7
- Chain R
- ribosomal protein S13
- Chain X
- ribosomal protein S19e
- Chain a
- ribosomal protein S25e
Coloring options: