J3_6AZ1_018
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCGGAC*GAAUG*CUCAAUG
- Length
- 18 nucleotides
- Bulged bases
- 6AZ1|1|1|G|1569, 6AZ1|1|1|A|1846, 6AZ1|1|1|U|1848
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6AZ1_018 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.2366
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6AZ1|1|1|C|1567
6AZ1|1|1|C|1568
6AZ1|1|1|G|1569
6AZ1|1|1|G|1570
6AZ1|1|1|A|1571
6AZ1|1|1|C|1572
*
6AZ1|1|1|G|1615
6AZ1|1|1|A|1616
6AZ1|1|1|A|1617
6AZ1|1|1|U|1618
6AZ1|1|1|G|1619
*
6AZ1|1|1|C|1843
6AZ1|1|1|U|1844
6AZ1|1|1|C|1845
6AZ1|1|1|A|1846
6AZ1|1|1|A|1847
6AZ1|1|1|U|1848
6AZ1|1|1|G|1849
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain N
- ribosomal protein S10e
- Chain S
- ribosomal protein S14
- Chain f
- ribosomal protein S31e
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