J3_6B4V_059

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6B4V_059 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0877

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6B4V|1|B|G|1424
6B4V|1|B|G|1425
6B4V|1|B|G|1426
6B4V|1|B|A|1427
6B4V|1|B|C|1428
6B4V|1|B|G|1429
*
6B4V|1|B|C|1564
6B4V|1|B|C|1565
*
6B4V|1|B|G|1568
6B4V|1|B|A|1569
6B4V|1|B|A|1570
6B4V|1|B|A|1571
6B4V|1|B|A|1572
6B4V|1|B|G|1573
6B4V|1|B|C|1574

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L2