J3_6B4V_070
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6B4V|1|FB|U|448, 6B4V|1|FB|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6B4V_070 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0973
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6B4V|1|FB|C|32
6B4V|1|FB|U|33
6B4V|1|FB|C|34
6B4V|1|FB|G|35
*
6B4V|1|FB|C|445
6B4V|1|FB|G|446
6B4V|1|FB|A|447
6B4V|1|FB|U|448
6B4V|1|FB|A|449
6B4V|1|FB|G|450
6B4V|1|FB|C|451
6B4V|1|FB|G|452
6B4V|1|FB|C|453
6B4V|1|FB|A|454
6B4V|1|FB|C|455
6B4V|1|FB|C|456
6B4V|1|FB|A|457
6B4V|1|FB|G|458
6B4V|1|FB|U|459
6B4V|1|FB|A|460
6B4V|1|FB|C|461
*
6B4V|1|FB|G|468
6B4V|1|FB|G|469
6B4V|1|FB|A|470
6B4V|1|FB|A|471
6B4V|1|FB|A|472
6B4V|1|FB|G|473
Current chains
- Chain FB
- 23S ribosomal RNA
Nearby chains
- Chain IC
- 50S ribosomal protein L34
- Chain KB
- 50S ribosomal protein L4
- Chain VB
- 50S ribosomal protein L20
- Chain YB
- 50S ribosomal protein L23
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