J3_6BOH_049

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

6BOH|1|GB|G|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOH_049 not in the Motif Atlas

Homologous match to J3_4WF9_021

Geometric discrepancy: 0.2405

The information below is about J3_4WF9_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6BOH|1|GB|C|2814
6BOH|1|GB|C|2815
*
6BOH|1|GB|G|2831
6BOH|1|GB|U|2832
6BOH|1|GB|G|2833
6BOH|1|GB|G|2834
6BOH|1|GB|A|2835
6BOH|1|GB|U|2836
*
6BOH|1|GB|A|2882
6BOH|1|GB|A|2883
6BOH|1|GB|U|2884
6BOH|1|GB|C|2885
6BOH|1|GB|G|2886

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain HC

50S ribosomal protein L32

Chain KB

50S ribosomal protein L3

Chain TB

50S ribosomal protein L17