J3_6BOH_070

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6BOH|1|GB|U|504, 6BOH|1|GB|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOH_070 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.08

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6BOH|1|GB|G|30
6BOH|1|GB|C|31
*
6BOH|1|GB|G|474
6BOH|1|GB|U|475
6BOH|1|GB|G|476
6BOH|1|GB|A|477
6BOH|1|GB|A|478
6BOH|1|GB|A|479
6BOH|1|GB|A|480
6BOH|1|GB|G|481
6BOH|1|GB|A|482
6BOH|1|GB|A|483
6BOH|1|GB|C|484
*
6BOH|1|GB|G|496
6BOH|1|GB|A|497
6BOH|1|GB|G|498
6BOH|1|GB|U|499
6BOH|1|GB|G|500
6BOH|1|GB|A|501
6BOH|1|GB|A|502
6BOH|1|GB|A|503
6BOH|1|GB|U|504
6BOH|1|GB|A|505
6BOH|1|GB|G|506
6BOH|1|GB|A|507
6BOH|1|GB|G|508
6BOH|1|GB|C|509
6BOH|1|GB|C|510

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L24

Chain WB

50S ribosomal protein L20

Chain YB

50S ribosomal protein L22