J3_6BY1_004

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6BY1|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BY1_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1993

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6BY1|1|AA|C|826
6BY1|1|AA|U|827
6BY1|1|AA|U|828
6BY1|1|AA|G|829
*
6BY1|1|AA|C|857
6BY1|1|AA|G|858
6BY1|1|AA|G|859
6BY1|1|AA|A|860
6BY1|1|AA|G|861
*
6BY1|1|AA|C|868
6BY1|1|AA|G|869
6BY1|1|AA|U|870
6BY1|1|AA|U|871
6BY1|1|AA|A|872
6BY1|1|AA|A|873
6BY1|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AX

Messenger RNA