J3_6BY1_025

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6BY1|1|BA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BY1_025 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.2016

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

6BY1|1|BA|C|1237
6BY1|1|BA|A|1238
6BY1|1|BA|A|1239
6BY1|1|BA|U|1240
6BY1|1|BA|G|1241
*
6BY1|1|BA|C|1296
6BY1|1|BA|G|1297
6BY1|1|BA|U|1298
6BY1|1|BA|A|1299
6BY1|1|BA|G|1300
6BY1|1|BA|U|1301
6BY1|1|BA|C|1302
6BY1|1|BA|C|1303
*
6BY1|1|BA|G|1334
6BY1|1|BA|U|1335
6BY1|1|BA|C|1336
6BY1|1|BA|G|1337

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BM

30S ribosomal protein S13