J3_6BY1_046

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BY1_046 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.134

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6BY1|1|DA|C|1298
6BY1|1|DA|G|1299
6BY1|1|DA|G|1300
6BY1|1|DA|A|1301
6BY1|1|DA|A|1302
6BY1|1|DA|G|1303
*
6BY1|1|DA|C|1625
6BY1|1|DA|A|1626
6BY1|1|DA|G|1627
*
6BY1|1|DA|C|1639
6BY1|1|DA|A|1640
6BY1|1|DA|A|1641
6BY1|1|DA|G|1642

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DN

50S ribosomal protein L17