J3_6BY1_047

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6BY1|1|DA|C|1607, 6BY1|1|DA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BY1_047 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.2363

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6BY1|1|DA|C|1306
6BY1|1|DA|A|1307
6BY1|1|DA|A|1308
6BY1|1|DA|G|1309
*
6BY1|1|DA|C|1605
6BY1|1|DA|C|1606
6BY1|1|DA|C|1607
6BY1|1|DA|A|1608
6BY1|1|DA|A|1609
6BY1|1|DA|A|1610
6BY1|1|DA|C|1611
*
6BY1|1|DA|G|1620
6BY1|1|DA|U|1621
6BY1|1|DA|G|1622

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L34