J3_6BY1_054
3D structure
- PDB id
- 6BY1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pH03H9 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.94 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 6BY1|1|DB|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6BY1_054 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.235
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6BY1|1|DB|G|10
6BY1|1|DB|C|11
6BY1|1|DB|C|12
6BY1|1|DB|G|13
6BY1|1|DB|U|14
6BY1|1|DB|A|15
6BY1|1|DB|G|16
*
6BY1|1|DB|C|68
6BY1|1|DB|G|69
6BY1|1|DB|C|70
*
6BY1|1|DB|G|106
6BY1|1|DB|G|107
6BY1|1|DB|A|108
6BY1|1|DB|A|109
6BY1|1|DB|C|110
Current chains
- Chain DB
- 5S ribosomal RNA
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DO
- 50S ribosomal protein L18
- Chain DW
- 50S ribosomal protein L27
Coloring options: