J3_6BY1_076

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6BY1|1|DA|A|504, 6BY1|1|DA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BY1_076 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.154

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6BY1|1|DA|G|30
6BY1|1|DA|C|31
*
6BY1|1|DA|G|474
6BY1|1|DA|C|475
6BY1|1|DA|G|476
6BY1|1|DA|A|477
6BY1|1|DA|A|478
6BY1|1|DA|A|479
6BY1|1|DA|A|480
6BY1|1|DA|G|481
6BY1|1|DA|A|482
6BY1|1|DA|A|483
6BY1|1|DA|C|484
*
6BY1|1|DA|G|496
6BY1|1|DA|A|497
6BY1|1|DA|G|498
6BY1|1|DA|U|499
6BY1|1|DA|G|500
6BY1|1|DA|A|501
6BY1|1|DA|A|502
6BY1|1|DA|A|503
6BY1|1|DA|A|504
6BY1|1|DA|A|505
6BY1|1|DA|G|506
6BY1|1|DA|A|507
6BY1|1|DA|A|508
6BY1|1|DA|C|509
6BY1|1|DA|C|510

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DQ

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24