J3_6D8M_001

3D structure

PDB id

6D8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant A125U/G126U

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAAG*UGGC*GGUAUG

Length

14 nucleotides

Bulged bases

6D8M|1|A|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6D8M_001 not in the Motif Atlas

Geometric match to J3_1GID_002

Geometric discrepancy: 0.0952

The information below is about J3_1GID_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23680.1

Basepair signature

cWW-F-tHS-F-tHS-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6D8M|1|A|C|138
6D8M|1|A|A|139
6D8M|1|A|A|140
6D8M|1|A|G|141
*
6D8M|1|A|U|162
6D8M|1|A|G|163
6D8M|1|A|G|164
6D8M|1|A|C|165
*
6D8M|1|A|G|175
6D8M|1|A|G|176
6D8M|1|A|U|177
6D8M|1|A|A|178
6D8M|1|A|U|179
6D8M|1|A|G|180

Current chains

Chain A

Group I self-splicing intron

Nearby chains

Chain B

Group I self-splicing intron