J3_6D90_002

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6D90_002 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2524

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6D90|1|2|A|816
6D90|1|2|G|817
6D90|1|2|A|818
6D90|1|2|G|819
*
6D90|1|2|C|829
6D90|1|2|A|830
6D90|1|2|G|831
*
6D90|1|2|C|843
6D90|1|2|U|844
6D90|1|2|G|845
6D90|1|2|G|846
6D90|1|2|A|847
6D90|1|2|U|848

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain KK

uS4

Chain ZZ

eS24