J3_6D90_005

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6D90_005 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1518

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6D90|1|2|C|1218
6D90|1|2|C|1219
6D90|1|2|A|1220
6D90|1|2|G|1221
*
6D90|1|2|C|1645
6D90|1|2|C|1646
6D90|1|2|A|1647
6D90|1|2|G|1648
6D90|1|2|U|1649
6D90|1|2|A|1650
6D90|1|2|A|1651
*
6D90|1|2|U|1673
6D90|1|2|G|1674
6D90|1|2|A|1675
6D90|1|2|U|1676
6D90|1|2|U|1677
6D90|1|2|A|1678
6D90|1|2|A|1679
6D90|1|2|G|1680

Current chains

Chain 2

18S rRNA

Nearby chains

Chain GG

uS7

Chain RR

uS9

Chain dd

eS28