J3_6D90_008

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

6D90|1|2|G|1274, 6D90|1|2|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6D90_008 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1593

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6D90|1|2|C|1272
6D90|1|2|C|1273
6D90|1|2|G|1274
6D90|1|2|G|1275
6D90|1|2|A|1276
6D90|1|2|C|1277
*
6D90|1|2|G|1320
6D90|1|2|G|1321
6D90|1|2|G|1322
6D90|1|2|U|1323
6D90|1|2|G|1324
*
6D90|1|2|U|1504
6D90|1|2|U|1505
6D90|1|2|A|1506
6D90|1|2|G|1507
6D90|1|2|A|1508
6D90|1|2|U|1509
6D90|1|2|G|1510

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LL

eS10

Chain ee

eS29

Chain gg

eS31

Chain jj

eRF1