J3_6D9J_006

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6D9J_006 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.2608

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6D9J|1|2|C|1218
6D9J|1|2|C|1219
6D9J|1|2|A|1220
6D9J|1|2|G|1221
*
6D9J|1|2|C|1645
6D9J|1|2|C|1646
6D9J|1|2|A|1647
6D9J|1|2|G|1648
6D9J|1|2|U|1649
6D9J|1|2|A|1650
6D9J|1|2|A|1651
*
6D9J|1|2|U|1673
6D9J|1|2|G|1674
6D9J|1|2|A|1675
6D9J|1|2|U|1676
6D9J|1|2|U|1677
6D9J|1|2|A|1678
6D9J|1|2|A|1679
6D9J|1|2|G|1680

Current chains

Chain 2

18S rRNA

Nearby chains

Chain GG

uS7

Chain RR

uS9

Chain dd

eS28