J3_6D9J_014
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6D9J|1|5|A|1534, 6D9J|1|5|G|1641
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6D9J_014 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.1948
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6D9J|1|5|U|1531
6D9J|1|5|G|1532
6D9J|1|5|A|1533
6D9J|1|5|A|1534
6D9J|1|5|C|1535
6D9J|1|5|U|1536
6D9J|1|5|A|1537
*
6D9J|1|5|U|1622
6D9J|1|5|A|1623
6D9J|1|5|G|1624
*
6D9J|1|5|C|1640
6D9J|1|5|G|1641
6D9J|1|5|A|1642
6D9J|1|5|A|1643
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain N
- eL15
- Chain j
- eL37
- Chain l
- eL39
Coloring options: