J3_6DNC_018

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

6DNC|1|B|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DNC_018 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1352

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6DNC|1|B|C|1298
6DNC|1|B|G|1299
6DNC|1|B|G|1300
6DNC|1|B|A|1301
6DNC|1|B|A|1302
6DNC|1|B|G|1303
*
6DNC|1|B|C|1625
6DNC|1|B|A|1626
6DNC|1|B|G|1627
*
6DNC|1|B|C|1639
6DNC|1|B|A|1640
6DNC|1|B|A|1641
6DNC|1|B|G|1642

Current chains

Chain B

23S ribosomal RNA

Nearby chains