J3_6DNC_036

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DNC_036 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1048

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6DNC|1|B|G|1424
6DNC|1|B|G|1425
6DNC|1|B|G|1426
6DNC|1|B|A|1427
6DNC|1|B|C|1428
6DNC|1|B|G|1429
*
6DNC|1|B|C|1564
6DNC|1|B|C|1565
*
6DNC|1|B|G|1568
6DNC|1|B|A|1569
6DNC|1|B|A|1570
6DNC|1|B|A|1571
6DNC|1|B|A|1572
6DNC|1|B|G|1573
6DNC|1|B|C|1574

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L2