J3_6DTI_004

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6DTI|1|A|U|849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DTI_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0622

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6DTI|1|A|C|810
6DTI|1|A|U|811
6DTI|1|A|A|812
6DTI|1|A|G|813
*
6DTI|1|A|C|835
6DTI|1|A|G|836
6DTI|1|A|A|837
6DTI|1|A|A|838
6DTI|1|A|G|839
*
6DTI|1|A|C|846
6DTI|1|A|G|847
6DTI|1|A|U|848
6DTI|1|A|U|849
6DTI|1|A|A|850
6DTI|1|A|A|851
6DTI|1|A|G|852

Current chains

Chain A

16s rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8