J3_6DTI_011

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

6DTI|1|A|U|1217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DTI_011 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.074

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6DTI|1|A|C|1214
6DTI|1|A|A|1215
6DTI|1|A|A|1216
6DTI|1|A|U|1217
6DTI|1|A|G|1218
*
6DTI|1|A|C|1273
6DTI|1|A|C|1274
6DTI|1|A|C|1275
6DTI|1|A|A|1276
6DTI|1|A|G|1277
6DTI|1|A|U|1278
6DTI|1|A|U|1279
6DTI|1|A|C|1280
*
6DTI|1|A|G|1311
6DTI|1|A|C|1312
6DTI|1|A|C|1313
6DTI|1|A|G|1314

Current chains

Chain A

16s rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain M

30S ribosomal protein S13

Chain V

30S ribosomal protein Thx