J3_6DTI_015

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6DTI|1|A|C|1191

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DTI_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1343

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6DTI|1|A|C|968
6DTI|1|A|U|969
6DTI|1|A|U|970
6DTI|1|A|G|971
6DTI|1|A|A|972
6DTI|1|A|C|973
6DTI|1|A|A|974
6DTI|1|A|U|975
*
6DTI|1|A|A|1022
6DTI|1|A|C|1023
6DTI|1|A|A|1024
6DTI|1|A|G|1025
*
6DTI|1|A|C|1187
6DTI|1|A|U|1188
6DTI|1|A|U|1189
6DTI|1|A|A|1190
6DTI|1|A|C|1191
6DTI|1|A|G|1192

Current chains

Chain A

16s rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain N

30S ribosomal protein S14 type Z