J3_6EK0_004

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGA(A2M)CUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

6EK0|1|L5|G|1641

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6EK0_004 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.0773

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6EK0|1|L5|U|1531
6EK0|1|L5|G|1532
6EK0|1|L5|A|1533
6EK0|1|L5|A2M|1534
6EK0|1|L5|C|1535
6EK0|1|L5|U|1536
6EK0|1|L5|A|1537
*
6EK0|1|L5|U|1622
6EK0|1|L5|A|1623
6EK0|1|L5|G|1624
*
6EK0|1|L5|C|1640
6EK0|1|L5|G|1641
6EK0|1|L5|A|1642
6EK0|1|L5|A|1643

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37