J3_6EK0_006

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6EK0|1|L5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6EK0_006 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0819

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6EK0|1|L5|C|2393
6EK0|1|L5|G|2394
6EK0|1|L5|A|2395
6EK0|1|L5|A|2396
6EK0|1|L5|G|2397
6EK0|1|L5|U|2398
6EK0|1|L5|G|2399
*
6EK0|1|L5|C|2805
6EK0|1|L5|A|2806
6EK0|1|L5|A|2807
*
6EK0|1|L5|U|2819
6EK0|1|L5|C|2820
6EK0|1|L5|U|2821
6EK0|1|L5|G|2822

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34