J3_6EML_006

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6EML_006 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1747

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6EML|1|2|C|1161
6EML|1|2|C|1162
6EML|1|2|A|1163
6EML|1|2|G|1164
*
6EML|1|2|C|1581
6EML|1|2|U|1582
6EML|1|2|A|1583
6EML|1|2|G|1584
6EML|1|2|U|1585
6EML|1|2|A|1586
6EML|1|2|A|1587
*
6EML|1|2|U|1609
6EML|1|2|G|1610
6EML|1|2|A|1611
6EML|1|2|U|1612
6EML|1|2|U|1613
6EML|1|2|A|1614
6EML|1|2|C|1615
6EML|1|2|G|1616

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S5

Chain F

40S ribosomal protein S16-A

Chain L

40S ribosomal protein S28-B