J3_6EML_010

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6EML_010 not in the Motif Atlas

Geometric match to J3_4V88_082

Geometric discrepancy: 0.348

The information below is about J3_4V88_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.1

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6EML|1|2|U|1293
6EML|1|2|G|1294
*
6EML|1|2|U|1303
6EML|1|2|G|1304
6EML|1|2|U|1305
6EML|1|2|C|1306
*
6EML|1|2|G|1318
6EML|1|2|A|1319
6EML|1|2|U|1320
6EML|1|2|A|1321
6EML|1|2|A|1322

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S17-A

Chain P

40S ribosomal protein S0-A

Chain R

40S ribosomal protein S2