J3_6EML_013
3D structure
- PDB id
- 6EML (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 6EML|1|2|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6EML_013 not in the Motif Atlas
- Homologous match to J3_8C3A_083
- Geometric discrepancy: 0.0941
- The information below is about J3_8C3A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.2
- Basepair signature
- cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6EML|1|2|A|41
6EML|1|2|G|42
6EML|1|2|A|43
6EML|1|2|U|44
6EML|1|2|U|45
6EML|1|2|A|46
6EML|1|2|A|47
6EML|1|2|G|48
*
6EML|1|2|C|431
6EML|1|2|G|432
6EML|1|2|C|433
6EML|1|2|G|434
6EML|1|2|C|435
6EML|1|2|A|436
6EML|1|2|A|437
6EML|1|2|A|438
6EML|1|2|U|439
*
6EML|1|2|A|464
6EML|1|2|G|465
6EML|1|2|U|466
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain V
- 40S ribosomal protein S8-A
- Chain W
- 40S ribosomal protein S9-A
- Chain c
- 40S ribosomal protein S23-A
- Chain t
- Ribosome biogenesis protein TSR1
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