J3_6ENF_005

3D structure

PDB id

6ENF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ENF_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1077

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6ENF|1|A|C|1298
6ENF|1|A|G|1299
6ENF|1|A|G|1300
6ENF|1|A|A|1301
6ENF|1|A|A|1302
6ENF|1|A|G|1303
*
6ENF|1|A|C|1625
6ENF|1|A|A|1626
6ENF|1|A|G|1627
*
6ENF|1|A|C|1639
6ENF|1|A|A|1640
6ENF|1|A|A|1641
6ENF|1|A|G|1642

Current chains

Chain A

23S ribosomal RNA

Nearby chains