J3_6ENF_006

3D structure

PDB id

6ENF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6ENF|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ENF_006 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1187

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6ENF|1|A|C|1306
6ENF|1|A|A|1307
6ENF|1|A|A|1308
6ENF|1|A|G|1309
*
6ENF|1|A|C|1605
6ENF|1|A|C|1606
6ENF|1|A|C|1607
6ENF|1|A|A|1608
6ENF|1|A|A|1609
6ENF|1|A|A|1610
6ENF|1|A|C|1611
*
6ENF|1|A|G|1620
6ENF|1|A|U|1621
6ENF|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34