J3_6ENF_034

3D structure

PDB id

6ENF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6ENF|1|a|U|1212, 6ENF|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ENF_034 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1334

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6ENF|1|a|C|990
6ENF|1|a|U|991
6ENF|1|a|U|992
6ENF|1|a|G|993
6ENF|1|a|A|994
6ENF|1|a|C|995
6ENF|1|a|A|996
6ENF|1|a|U|997
*
6ENF|1|a|A|1044
6ENF|1|a|C|1045
6ENF|1|a|A|1046
6ENF|1|a|G|1047
*
6ENF|1|a|C|1210
6ENF|1|a|U|1211
6ENF|1|a|U|1212
6ENF|1|a|A|1213
6ENF|1|a|C|1214
6ENF|1|a|G|1215

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14