J3_6ERI_006

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ERI_006 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.231

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

6ERI|1|AA|G|1083
6ERI|1|AA|G|1084
6ERI|1|AA|A|1085
*
6ERI|1|AA|U|1109
6ERI|1|AA|U|1110
6ERI|1|AA|G|1111
6ERI|1|AA|A|1112
6ERI|1|AA|A|1113
6ERI|1|AA|A|1114
6ERI|1|AA|G|1115
*
6ERI|1|AA|C|1130
6ERI|1|AA|A|1131
6ERI|1|AA|C|1132

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain Ae

50S ribosomal protein L36, chloroplastic