J3_6ERI_007

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAA*UAG*CUAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ERI_007 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1277

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6ERI|1|AA|C|1319
6ERI|1|AA|G|1320
6ERI|1|AA|A|1321
6ERI|1|AA|A|1322
6ERI|1|AA|A|1323
6ERI|1|AA|A|1324
*
6ERI|1|AA|U|1661
6ERI|1|AA|A|1662
6ERI|1|AA|G|1663
*
6ERI|1|AA|C|1675
6ERI|1|AA|U|1676
6ERI|1|AA|A|1677
6ERI|1|AA|G|1678

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain Aw

50S ribosomal protein 5 alpha, chloroplastic