J3_6ERI_011
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUC*GAG*CAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 6ERI|1|AA|G|2351, 6ERI|1|AA|A|2353
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ERI_011 not in the Motif Atlas
- Homologous match to J3_4WF9_008
- Geometric discrepancy: 0.2139
- The information below is about J3_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
6ERI|1|AA|C|2312
6ERI|1|AA|U|2313
6ERI|1|AA|C|2314
*
6ERI|1|AA|G|2338
6ERI|1|AA|A|2339
6ERI|1|AA|G|2340
*
6ERI|1|AA|C|2349
6ERI|1|AA|A|2350
6ERI|1|AA|G|2351
6ERI|1|AA|A|2352
6ERI|1|AA|A|2353
6ERI|1|AA|G|2354
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AF
- 50S ribosomal protein L5, chloroplastic
- Chain AO
- 50S ribosomal protein L18, chloroplastic
- Chain AW
- 50S ribosomal protein L27, chloroplastic
- Chain Ax
- 5S ribosomal RNA; 5S rRNA
Coloring options: