J3_6ERI_017

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGG*CUGGA*UGACA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ERI_017 not in the Motif Atlas

Homologous match to J3_5J7L_051

Geometric discrepancy: 0.1447

The information below is about J3_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.4

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6ERI|1|BA|U|535
6ERI|1|BA|G|536
6ERI|1|BA|G|537
*
6ERI|1|BA|C|600
6ERI|1|BA|U|601
6ERI|1|BA|G|602
6ERI|1|BA|G|603
6ERI|1|BA|A|604
*
6ERI|1|BA|U|700
6ERI|1|BA|G|701
6ERI|1|BA|A|702
6ERI|1|BA|C|703
6ERI|1|BA|A|704

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BH

30S ribosomal protein S8, chloroplastic

Chain BO

30S ribosomal protein S15, chloroplastic

Chain BQ

30S ribosomal protein S17, chloroplastic