J3_6ERI_019

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAG*UGUAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6ERI|1|BA|U|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ERI_019 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1091

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6ERI|1|BA|C|775
6ERI|1|BA|U|776
6ERI|1|BA|A|777
6ERI|1|BA|G|778
*
6ERI|1|BA|U|807
6ERI|1|BA|G|808
6ERI|1|BA|U|809
6ERI|1|BA|A|810
6ERI|1|BA|G|811
*
6ERI|1|BA|C|818
6ERI|1|BA|G|819
6ERI|1|BA|U|820
6ERI|1|BA|U|821
6ERI|1|BA|A|822
6ERI|1|BA|A|823
6ERI|1|BA|G|824

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S2, chloroplastic

Chain BH

30S ribosomal protein S8, chloroplastic