J3_6ERI_028

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

6ERI|1|BA|U|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ERI_028 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1458

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

6ERI|1|BA|C|1186
6ERI|1|BA|A|1187
6ERI|1|BA|A|1188
6ERI|1|BA|U|1189
6ERI|1|BA|G|1190
*
6ERI|1|BA|C|1245
6ERI|1|BA|U|1246
6ERI|1|BA|C|1247
6ERI|1|BA|A|1248
6ERI|1|BA|G|1249
6ERI|1|BA|U|1250
6ERI|1|BA|U|1251
6ERI|1|BA|C|1252
*
6ERI|1|BA|G|1283
6ERI|1|BA|C|1284
6ERI|1|BA|C|1285
6ERI|1|BA|G|1286

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BG

30S ribosomal protein S7, chloroplastic

Chain BM

30S ribosomal protein S13, chloroplastic

Chain BW

30S ribosomal protein S31, chloroplastic