J3_6ERI_031
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUAG*CGAUAGCGAAGUAGUAC*GGAAGG
- Length
- 27 nucleotides
- Bulged bases
- 6ERI|1|AA|A|33, 6ERI|1|AA|U|460, 6ERI|1|AA|U|468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ERI_031 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.2193
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6ERI|1|AA|C|31
6ERI|1|AA|U|32
6ERI|1|AA|A|33
6ERI|1|AA|G|34
*
6ERI|1|AA|C|457
6ERI|1|AA|G|458
6ERI|1|AA|A|459
6ERI|1|AA|U|460
6ERI|1|AA|A|461
6ERI|1|AA|G|462
6ERI|1|AA|C|463
6ERI|1|AA|G|464
6ERI|1|AA|A|465
6ERI|1|AA|A|466
6ERI|1|AA|G|467
6ERI|1|AA|U|468
6ERI|1|AA|A|469
6ERI|1|AA|G|470
6ERI|1|AA|U|471
6ERI|1|AA|A|472
6ERI|1|AA|C|473
*
6ERI|1|AA|G|480
6ERI|1|AA|G|481
6ERI|1|AA|A|482
6ERI|1|AA|A|483
6ERI|1|AA|G|484
6ERI|1|AA|G|485
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AE
- 50S ribosomal protein L4, chloroplastic
- Chain AQ
- 50S ribosomal protein L20, chloroplastic
- Chain AU
- 50S ribosomal protein L24, chloroplastic
- Chain Ac
- 50S ribosomal protein L34, chloroplastic
Coloring options: