J3_6ERI_036

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

6ERI|1|BA|U|1163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ERI_036 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1523

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6ERI|1|BA|C|940
6ERI|1|BA|U|941
6ERI|1|BA|U|942
6ERI|1|BA|G|943
6ERI|1|BA|A|944
6ERI|1|BA|C|945
6ERI|1|BA|A|946
6ERI|1|BA|U|947
*
6ERI|1|BA|A|994
6ERI|1|BA|C|995
6ERI|1|BA|A|996
6ERI|1|BA|G|997
*
6ERI|1|BA|C|1159
6ERI|1|BA|U|1160
6ERI|1|BA|U|1161
6ERI|1|BA|A|1162
6ERI|1|BA|U|1163
6ERI|1|BA|G|1164

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BN

30S ribosomal protein S14, chloroplastic